- Received: July, 29, 2023
- Revised: October, 2, 2023
- Accepted for publication: October, 20, 2023
- DOI 10.26902/JSC_id121415
- EDN: ZWTABL
- Views: 184
©
Suhta A.
1 , Saral S.
2, Çoruh U.
1, Karakuş S.
2, Vazquez-Lopez E.M.
3
1 Department of Physics, Faculty of Sciences, Ondokuz Mayıs University, Atakum, Samsun, Turkey
2 Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Marmara University, İstanbul, Turkey
3 Department of Inorganic Chemistry, University of Vigo, Vigo, Galicia, Spain
A new Schiff base compound of N'-[(2,6-dichlorophenyl)methylidene]-2-{[3-(trifluoromethyl)phenyl]amino}benzohydrazide was synthesized and characterized through various spectroscopic techniques, including infrared, 1H NMR, 13C
NMR spectroscopy and X-ray diffraction. Experimental results collected by XRD were compared with theoretical results obtained from Density functional theory method. Hirshfeld surface analysis was used to obtain three dimension molecular surface and two dimension fingerprint plots to illustrate the intermolecular bonding. Theoretical calculations provide valuable insights into both global and local chemical activity, as well as the properties of molecules and chemicals, including their nucleophilic and electrophilic nature. The DFT method at B3LYP/6-311++G(d,p)
basis set was employed to study the optimized structure and geometric
parameters, as well as to explore the frontier molecular orbitals, global
reactive parameters, Mullikan population analaysis, Natural bond orbital and
molecular electrostatic potential characteristics which cannot be obtained by
experimental methods. Additionally, electrophilicity based charge transfer
study was carried out with DNA bases to determine the direction of charge transfer. Finally, an investigation
was carried out using molecular docking analysis to examine the binding
energies of the title compound with PDB ID: 2QDJ protein target. The analysis
yielded significant insights into the possible interactions, offering valuable
findings in the process.
Keywords: hydrazone, DFT calculations, X-ray diffraction, Hirshfeld surfaces, DNA/ECT charge transfer method, molecular docking